PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076369001
Common NameGSBRNA2T00076369001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 175aa    MW: 19329.9 Da    PI: 9.8059
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076369001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-3858116260
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                          ++k+++cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGalrnvPvG+grrk k 
  GSBRNA2T00076369001  58 PDKIIACPRCKSMETKFCYFNNYNVKQPRHFCRGCQRYWTAGGALRNVPVGAGRRKAKP 116
                          68999***************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2857115IPR003851Zinc finger, Dof-type
PfamPF027014.0E-3260115IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.71762116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MATQDSQGIK LFGKTITFNA SNITTTTIKR EVHQQQPEVQ ATTDVRSSST DLTVEKRPDK  60
IIACPRCKSM ETKFCYFNNY NVKQPRHFCR GCQRYWTAGG ALRNVPVGAG RRKAKPPGRV  120
GGFAEFLGAA TGAVDQVELD ALLVEEWRAA ASHGGFRHDF PVKRLRCYTD GQSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.101420.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076369001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210431e-149AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence.
GenBankBT0299901e-149BT029990.1 Arabidopsis thaliana At1g29160 mRNA, complete cds.
GenBankCP0026841e-149CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626298.11e-130PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683501e-106DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A078I0F11e-130A0A078I0F1_BRANA; BnaC03g58930D protein
TrEMBLA0A0D3BIR81e-130A0A0D3BIR8_BRAOL; Uncharacterized protein
STRINGBra010848.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-107Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]